INTRO TO BIO

➮ GitHub Repo: Useful Biology Resources for Computer Scientists

➮ Learn Genomics for Engineers

➮ Molecular Biology for Computer Scientists

INTRO TO AI FOR BIO

🤗 Deep Learning with Proteins

➮ BitsizeBio: Short Article on AI in Biology

➮ MIT Lecture: Deep Learning for the Life Sciences

➮ ML for Protein Engineering Seminar Series

➮ Rosalind: Learning Bioinformatics through problem-solving

➮ How to deploy BioML models on the Web

DATASETS

🤗 Genecorpus 30M

🤗 OpenProteinSet

🤗 AlphaMissense

🤗 Genomic Benchmarks

🤗 GuacaMol

🤗 Human Reference Genome

🤗 Nucleotide Transformer Downstream Tasks

🤗 BioDEX

🤗 PubMed

🤗 BigScience Biomedical’s Datasets

PROJECT INSPO

🤗 Explore Biology and Biochemistry Foundation Models

🤗 AI Biology Demos

Note: we can provide GPU grants for the hackathon for demos like these - see HF Resources for more information

🤗 ESMBind Blog Post: Low-Rank Adaptation of ESM2 for Protein Binding Site Prediction

➮ A preliminary roadmap for AI-assisted science

➮ GeneGPT

➮ TextbookGPT

➮ Emergent autonomous scientific research capabilities of large language models

➮ Literature review by ChatGPT

➮ Scientific protocols using GPT

➮ Labeling bio images for AI

➮ Automated RNA-Seq cell type annotation with GPT4

➮ Open-source object detection via YOLO-NAS

➮ Writing Image processing and analysis code with Omega

Hugging Face tools & Resources

🤗 Hugging Face Hub (sharing platform for models, datasets, and demos)

➮ Documentation

➮ Create an organization to collaborate with teammates and privately share models, datasets, and demos

➮ Downloading Models

➮ Using Datasets

➮ Creating Demos

➮ Request a GPU for free for your demo

🤗 Hugging Face Transformers library

🤗 Hugging Face Inference API

🤗 Hugging Face AutoTrain